MOM FAQ
Problem with collating outputs with payu
Your simulation runs correctly but the collating of the outputs does not work and you have this error message in the log file:
Traceback (most recent call last):
File "/jobfs/local/pbs/mom_priv/jobs/268316.r-man2.SC", line 9, in <module>
collate_cmd.runscript()
File "/apps/payu/0.6/lib/payu/subcommands/collate_cmd.py", line 93, in runscript
expt.collate()
File "/apps/payu/0.6/lib/payu/experiment.py", line 606, in collate
model.collate()
File "/apps/payu/0.6/lib/payu/models/fms.py", line 78, in collate
assert mppnc_path
AssertionError
This probably means you don't have a mppnccombine executable in you mom/bin directory. If you need such a file please contact climate_help@nci.org.au to know where to find it. Include a copy of the error message with your email please.
Locating log files
Log files from a Payu run will be in:
- $EXPERIMENT (Directory containing the 'config.yaml' file):
- $RUNID.out, $RUNID.err: Stdout and stderr of model run
- $RUNID.o123456, $RUNID.e123456: PBS logs
- $WORK ('work' symlink in $EXPERIMENT, or found under the laboratory path if that's not accessible)
- Any log files output by the component models
- $ARCHIVE ('archive' symlink in $EXPERIMENT, or found under the laboratory path)
- Log files from previous submissions
The laboratory path is configurable in config.yaml, normally it will be /scratch/$PROJECT/$USER/$MODEL