Difference between revisions of "MOM FAQ"

 
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This probably means you don't have a mppnccombine executable in you mom/bin directory. If you need such a file please contact climate_help@nci.org.au to know where to find it. Include a copy of the error message with your email please.
 
This probably means you don't have a mppnccombine executable in you mom/bin directory. If you need such a file please contact climate_help@nci.org.au to know where to find it. Include a copy of the error message with your email please.
 +
 +
= Locating log files =
 +
 +
Log files from a Payu run will be in:
 +
 +
* $EXPERIMENT (Directory containing the 'config.yaml' file):
 +
** $RUNID.out, $RUNID.err: Stdout and stderr of model run
 +
** $RUNID.o123456, $RUNID.e123456: PBS logs
 +
 +
* $WORK ('work' symlink in $EXPERIMENT, or found under the laboratory path if that's not accessible)
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** Any log files output by the component models
 +
 +
* $ARCHIVE ('archive' symlink in $EXPERIMENT, or found under the laboratory path)
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** Log files from previous submissions
 +
 +
The laboratory path is configurable in config.yaml, normally it will be /scratch/$PROJECT/$USER/$MODEL

Latest revision as of 18:13, 16 December 2019


Problem with collating outputs with payu


Your simulation runs correctly but the collating of the outputs does not work and you have this error message in the log file:

Traceback (most recent call last):
  File "/jobfs/local/pbs/mom_priv/jobs/268316.r-man2.SC", line 9, in <module>
    collate_cmd.runscript()
  File "/apps/payu/0.6/lib/payu/subcommands/collate_cmd.py", line 93, in runscript
    expt.collate()
  File "/apps/payu/0.6/lib/payu/experiment.py", line 606, in collate
    model.collate()
  File "/apps/payu/0.6/lib/payu/models/fms.py", line 78, in collate
    assert mppnc_path
AssertionError

This probably means you don't have a mppnccombine executable in you mom/bin directory. If you need such a file please contact climate_help@nci.org.au to know where to find it. Include a copy of the error message with your email please.

Locating log files

Log files from a Payu run will be in:

  • $EXPERIMENT (Directory containing the 'config.yaml' file):
    • $RUNID.out, $RUNID.err: Stdout and stderr of model run
    • $RUNID.o123456, $RUNID.e123456: PBS logs
  • $WORK ('work' symlink in $EXPERIMENT, or found under the laboratory path if that's not accessible)
    • Any log files output by the component models
  • $ARCHIVE ('archive' symlink in $EXPERIMENT, or found under the laboratory path)
    • Log files from previous submissions

The laboratory path is configurable in config.yaml, normally it will be /scratch/$PROJECT/$USER/$MODEL