MOM FAQ

Problem with collating outputs with payu

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Your simulation runs correctly but the collating of the outputs does not work and you have this error message in the log file:

Traceback (most recent call last):
  File "/jobfs/local/pbs/mom_priv/jobs/268316.r-man2.SC", line 9, in <module>
    collate_cmd.runscript()
  File "/apps/payu/0.6/lib/payu/subcommands/collate_cmd.py", line 93, in runscript
    expt.collate()
  File "/apps/payu/0.6/lib/payu/experiment.py", line 606, in collate
    model.collate()
  File "/apps/payu/0.6/lib/payu/models/fms.py", line 78, in collate
    assert mppnc_path
AssertionError

This probably means you don't have a mppnccombine executable in you mom/bin directory. If you need such a file please contact climate_help@nci.org.au to know where to find it. Include a copy of the error message with your email please.